PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G19120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 354aa    MW: 37854.9 Da    PI: 9.8614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G19120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-061436123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++Cgk F r  nL+ H r H
  OB01G19120.1 14 FVCEICGKGFQRDQNLQLHRRGH 36
                  89*******************88 PP
2zf-C2H213.30.0002490112123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k++  +s+ k H +t+
  OB01G19120.1  90 WKCDKCSKRYAVQSDWKAHSKTC 112
                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-6736IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-71236No hitNo description
PROSITE profilePS5015711.6141436IPR007087Zinc finger, C2H2
SMARTSM003550.0121436IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003552605585IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-478111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-785110No hitNo description
SMARTSM0035514090110IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAVVVVVQTR RRRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLRQRSGKEP RKRVYVCPEK  60
SCVHHNPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD  120
CGTLFSSHFL LSPWHAQRSR DALPPMSHIG VLANGGVAPV PPQLYADLFA PGSGAPPQFD  180
AAQLSWLYGN GKLSSSNSSE LTSATAAAAA AAKEAEDSVP SVFSNQQHAK PAAPTDMSAT  240
ALLQKAAQIG AVTSTAAVPL VGAFEPTKSG ATASPADAFG KFDGAAMFAA SHHNANLGSA  300
MSELTAAAGN VPYDVLSAVR HAGLKDAGVG REETRDFLGV GVQALCSSSI HGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-2186126343Zinc finger protein JACKDAW
5b3h_F6e-2186126343Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G19120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699276.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH35e-93IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLJ3KY560.0J3KY56_ORYBR; Uncharacterized protein
STRINGOB01G19120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.26e-76C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]