PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G18340.1 | ||||||||
Common Name | LOC102701112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 1000aa MW: 110378 Da PI: 5.0708 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ gRt+ qc +rwqk+l OB01G18340.1 55 KGNWTPEEDAILSRAVQTYNGKNWKKIAECFP-GRTDVQCLHRWQKVL 101 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OB01G18340.1 107 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 153 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 43.5 | 7.4e-14 | 159 | 201 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+ E+ l++a++++G++ W+ + ++ gRt++ +k++w+ OB01G18340.1 159 KEAWTQKEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 201 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.307 | 50 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.73E-20 | 53 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-17 | 54 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 55 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 57 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-15 | 57 | 101 | No hit | No description |
PROSITE profile | PS51294 | 30.712 | 102 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-30 | 104 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-18 | 106 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 107 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-15 | 109 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 119 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.587 | 158 | 208 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-13 | 158 | 206 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 159 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.38E-10 | 161 | 201 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 161 | 208 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1000 aa Download sequence Send to blast |
MSSLAMTTNS GKDPNKGREA SGPPSAPQEG EISKEPQRRR PLNGRTTGPT RRSTKGNWTP 60 EEDAILSRAV QTYNGKNWKK IAECFPGRTD VQCLHRWQKV LNPELVKGPW SKEEDDIIVQ 120 MVNKLGPKKW STIAQALPGR IGKQCRERWY NHLNPGINKE AWTQKEEITL IHAHRMYGNK 180 WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SSLPLNEYSA HCNSSPAMTQ 240 QNSEDSGCFA VQEVENSSGC SQSSLAKVSC SQVHNTSVAL GCDLQTNGNV DKNETHDSQS 300 SMGHEACYTS AEAAASVMTD VHYHVSSSNF DPDQHLQEDF AQGLNLHMSI DEMPSAPNSA 360 DNQSLCSIEN HERSLESYDV EMEMPLSLLP SDSGAEQKLH FMSEADFNSP NCLKSELWQD 420 ISLQSLLSGP DAVQTDCFSR LNQQSDAHSS KADTHFLAPS CPLQTSNPSC VMEDAYDQSP 480 QMSVPPSLIC SNVMTDAPSD NRPEPKEMPL SQAEMVMQSS SSSGDAEMFA NPGSSNDWHV 540 PSSTMGRIPE FGHQQVTNVE EPKASVEKEP SLTQSMTAPD EKKEQEEGAL FYEPPRFPSV 600 DVPFVSCDLV TSEDLQEYSP LGIRQLMHST MNVCTPIRLW GSPTHDGSPD VLLKSVAKSF 660 ICTPSILKKR HRDFLSPIPD KRIEKKCVTD KDRGVSYTSS TGIQTCFNAT NDDSLITKSV 720 LRIERSASSK PLEKNLFSDE NKENWTYTTE QAKDGQSAKN DEHMDEQARQ ERHSTTNIAT 780 TYDDLPGNLQ PAGILVEHSS DDLVSPAYDK NTMNQKLNTN IEPLSVCKEG VCAKSKPKEL 840 IVEKSSPCIN VDYEYVNIFA DTPGIKRGLE SPSAWKSPWF VDMQFQGSYF VSPADRTYDA 900 LGLVKQINVQ TAAALAEARE VLASGGQCDN INSDKENMQN PDAKEEPGAT KLPTKIMAEA 960 RILDFNECTP VRSSDKNAGS SLGRSLGSPI PSSNLLKSFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-64 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-64 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G18340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318601 | 0.0 | AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643940.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | J3KXX8 | 0.0 | J3KXX8_ORYBR; Uncharacterized protein | ||||
STRING | OB01G18340.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-106 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Entrez Gene | 102701112 |