PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G18260.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 751aa    MW: 86700.6 Da    PI: 9.102
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G18260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.82.4e-2559153289
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   fYn+YA++vGFsvrks+++k+ r+g + + +fvC+keg+++++kkk         +++ ++++  trtgCka+ ++++ k+g+w+++ +e++HnH +
  OB01G18260.1  59 FYNDYAYRVGFSVRKSSKTKN-RDG-VSSVRFVCNKEGFSDSQKKKkkpigsvndQRTPEKEKGMTRTGCKASCRIRLYKSGVWRISVFEENHNHVV 153
                   ****************98888.666.9**************9999999***99876667778899******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2259153IPR004330FAR1 DNA binding domain
PfamPF105511.5E-31276369IPR018289MULE transposase domain
PROSITE profilePS5096610.633560596IPR007527Zinc finger, SWIM-type
PfamPF044346.2E-4565595IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-6571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MADSTDPYVE NLDELLVGCM TPHEIEDSIE IIADEVAHGD KSQPYVGMEF STPEEAYTFY  60
NDYAYRVGFS VRKSSKTKNR DGVSSVRFVC NKEGFSDSQK KKKKPIGSVN DQRTPEKEKG  120
MTRTGCKASC RIRLYKSGVW RISVFEENHN HVVIKSPSKK RNLRSHKCLS EEDKKIIRNL  180
SAQNMKPSQI LEYLAVQYGG KQNIRFKKKD VSNEVSAENR SLLGVDVDTT LCYFQKKKEK  240
DPEFFYAIDL DENGAVKNIF WVDGRGRRSY QEFGDVVTFD TTYQTNIYSM PLAPFLGVSH  300
HRHTISFGWA LLRLEDAPNF CWLFKTWLEA MYGKHPSAII TDQDPAMKKA IVLIFPKTKH  360
RCCQWHVMRK ARDHLGLLYS QMEGFKEELQ AVINRSLTVV AFERDWEAML VKFKLTDNSH  420
LKLMFSTRTQ WVPAYFRDTF FANMSTTQRS ESMNAILKLW VDSHKSIYQF VKQIEKLTDG  480
IWQRESDEDL KSMNEQPHLY SPYQMEIEAR MVYTRNVFSV FKDIVRESFL GFVTEIIKDK  540
LYHVRISFNP QFRNFKPESY EIEVDIETSR VSCTCKGFEV EGLICPHSIK VMHHIGMAHL  600
PAHYILTRWT KGANANSKKH LSERSMDTGQ TIELQALRFA TIKSSLMEMG KVGALSVETF  660
NCLKQIIIDG MAKLMTMEDA KLMSMGQTIV TVDPPEDGTK EVSSKPLYID PPDAQCKGKR  720
KKLTRFQPPA DKKERKMRTC SICNAKKRPQ C
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G18260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645669.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3KXX00.0J3KXX0_ORYBR; Uncharacterized protein
STRINGOB01G18260.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-123FAR1-related sequence 5