PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G16990.1 | ||||||||
Common Name | LOC102708392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21714.4 Da PI: 10.5243 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.1e-11 | 36 | 82 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd ++ + G ++W+++a+ m +Rt+ qc++rw+++l OB01G16990.1 36 QAWTPEEDACRERLAGENGFRRWRRVASAMSRRRTPGQCRDRWRDHL 82 79******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.394 | 30 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-7 | 34 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-13 | 37 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-15 | 37 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-8 | 37 | 82 | No hit | No description |
Pfam | PF13921 | 2.8E-10 | 38 | 99 | No hit | No description |
PROSITE profile | PS50090 | 7.05 | 83 | 134 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.26E-8 | 86 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5 | 87 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 95 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDMETSPPAF SSTTTEGPAA TPTSSGRIVV RIRVSQAWTP EEDACRERLA GENGFRRWRR 60 VASAMSRRRT PGQCRDRWRD HLARDVYHRP FTSEDDAELA RIRLRDGRGR WKDISRAVYC 120 RSSRALKRRW RELRKSDAFL RALYWYPHQP VQPPADSIVL SCSVGCDAVA GGGKTPGISP 180 AWSYNLQESY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | RALKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G16990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002092 | 1e-101 | AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09. | |||
GenBank | AP002093 | 1e-101 | AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10. | |||
GenBank | AP014957 | 1e-101 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-101 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 1e-137 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | J3KXJ3 | 1e-135 | J3KXJ3_ORYBR; Uncharacterized protein | ||||
STRING | OB01G16990.1 | 1e-136 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-14 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Entrez Gene | 102708392 |