PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 304aa    MW: 32125.1 Da    PI: 7.2036
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82231.56.2e-103611471150
        DUF822  71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsssl 150
                   +g+kp+e+++++g+s s sp+ss+q        +sp++sy+asp+sssfps +s+ ++++ s+       + +lp+l++ls +++s+
  OB01G16610.1  36 AGYKPPERMDVIGCSVSPSPCSSYQ--------PSPRASYNASPTSSSFPSGASSPFLPHPSNmangvdnNPILPWLKTLSHSPASK 114
                   799**********************........99999999999999999999999998888888888889999****999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.4E-1236108IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPPVWTRARA WWVDLTECTL AILFVLQYRA LALAKAGYKP PERMDVIGCS VSPSPCSSYQ  60
PSPRASYNAS PTSSSFPSGA SSPFLPHPSN MANGVDNNPI LPWLKTLSHS PASKKHPQLP  120
PLLIHGGSIS APVTPPLSSP TARTPRMKTD WDESNAQPQW TGSNSPCVVN SSPPSPGRTM  180
LPDPAWLAGI QISSTSPSSP TFSLVSTNPF SVFKDAIPVG NSSSRMCTPG QSGTCSPAIP  240
GMAPHPDIHM MDVVSDEFAF GSSTNGGHQA AGLVRAWEGE RIHEDSGSDD LELTLGSSRT  300
RAAA
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643883.10.0PREDICTED: protein BZR1 homolog 2
SwissprotQ0JPT41e-159BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLJ3KXF50.0J3KXF5_ORYBR; Uncharacterized protein
STRINGOB01G16610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-44BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]