PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G16060.1

Common Name

LOC102702604

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 484aa MW: 51235.3 Da PI: 8.7166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G16060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H OB01G16060.1 74 YVCEICGKGFQRDQNLQLHRRGH 96 9********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.16E-8	73	96	No hit	No description
PROSITE profile	PS50157	11.801	74	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0069	74	96	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.3E-6	74	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	44	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-4	139	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.16E-8	146	171	No hit	No description
SMART	SM00355	150	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MMLKDLAEIQ QQQQQLAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV 60 IALSPKTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEA VRKKVYVCPE 120 AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ HAGAGLLFPQ GGGGLQLPAV 240 LDHPAMAMGG HGLMQELCLK REQQQQFAPS WLTAQQQQLE TMGSAVSPAA MYGSARLDQE 300 FIGSSTPESG AAQHQGGLSF AFSSTSSAPP PVASSAHMSA TALLQKAAQM GATLSRPSSQ 360 GQMAAASTHN STSATTNAAP PPTSNVTSTC VGAGSYGLAF EASHFIGADD RTRSDRATSN 420 GGGGGATAGA GNDGLTRDFL GLRAFSHGDI MSMAGFDPCS MSTTSASSAA YDQGHHHSNK 480 PWHS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MMLKDLAEIQ QQQQQLAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPKTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEA VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ HAGAGLLFPQ GGGGLQLPAV  240
LDHPAMAMGG HGLMQELCLK REQQQQFAPS WLTAQQQQLE TMGSAVSPAA MYGSARLDQE  300
FIGSSTPESG AAQHQGGLSF AFSSTSSAPP PVASSAHMSA TALLQKAAQM GATLSRPSSQ  360
GQMAAASTHN STSATTNAAP PPTSNVTSTC VGAGSYGLAF EASHFIGADD RTRSDRATSN  420
GGGGGATAGA GNDGLTRDFL GLRAFSHGDI MSMAGFDPCS MSTTSASSAA YDQGHHHSNK  480
PWHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-34	147	208	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-34	147	208	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	113	KLKQRNPKEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G16060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105663	0.0	AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643871.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Swissprot	Q8H1F5	1e-123	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	J3KXA0	0.0	J3KXA0_ORYBR; Uncharacterized protein
STRING	OB01G16060.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Entrez Gene	102702604

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]