PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15970.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 897aa    MW: 100879 Da    PI: 8.2438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-0977109337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                       W+++E  ++++a +++G++ Wk+I++ +g g+++
     OB01G15970.1  77 QWSKDELMRFYEAYHRYGKN-WKKISASVG-GKSA 109
                      6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.30473130IPR017884SANT domain
SuperFamilySSF466894.86E-976120IPR009057Homeodomain-like
PfamPF002491.1E-777110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-477112IPR009057Homeodomain-like
CDDcd001673.06E-578109No hitNo description
PfamPF065842.2E-28518614IPR033471DIRP domain
SMARTSM011358.0E-32518615IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MESGKISVKE IFVGVSSQGR IFLYNKSRKI SMGPAKGSRT ITKITIKGYD DQQHDEDPTS  60
SSKVKLKKRK MSDLGPQWSK DELMRFYEAY HRYGKNWKKI SASVGGKSAD TVEALYSAHR  120
TFLSLPEREG TAMGFVALVT GHHNVSQDES KSHKENDQMG RSSGKARKRG EATGQKEKEV  180
CHVHSSYHER TYGLSSFKKR YYGELVKSIP RHPTGRRTPR VPVIVPADMN AAHAAAPEIE  240
NAINYTKKDS EAINNELGCS PDGSSGISES AKVVQGQTSL ETKGTVDSQI HQTLGGLKKR  300
RIKQSMDHGQ AVKDEHETTV YQSLMRMFSP DEMLVLDVLE SLVTVPSKIS EPKINIPSGT  360
LGKDDSALSH RREEGPSSVK RSKQGKQAGE CNSSKTRNKR RKKLIAEEAP TEEPNISNHL  420
DLLEERQVDA TGCALNSDPE RGMINLPEST ANISSEVPDR LPPMKPEINM SRRTKRKSMK  480
QCGSKYAICN GADSLQARRL HHCLSSESLR RWCTYEWFYS AVDYPWFMDN DFVNYLNHAK  540
LSHLSRLTRS EWSTIRSSLG RPRRFSDHFL VAEKEKVEDY RKKVRQYYAD SRDSLPPDLA  600
RPFLIGQEVI VRHPRTRELC DGKVVMMEHD GYMVQFDRPD LGVDKVKDTD CMPVNWSDNL  660
PDDLKKRIFL PNNSHSRAEA EQIPKLTSKE NWDHISGEAE PSKTMHITSD EQIEIAVDIE  720
GLPNKSASSN CGPLQPLQSV DDIVRARDWS KHSNGYNDEL ISSFVEMSLS KAKQMVDEVI  780
QTIFENGKSS LEETVISNET TETKSPEPEF AAHSELPCNL IFNCVATILA IKHLSENRHP  840
PANIAGVLER ACLMLRPSCS ENLPIYNDIE NCISVIKNQI VALVPTTSSN ARLPMYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303LKKRRIKQ
2297302KKRRIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643869.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLJ3KX910.0J3KX91_ORYBR; Uncharacterized protein
STRINGOB01G15970.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.29e-60DNA binding