PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15870.1
Common NameLOC102700935
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 287aa    MW: 30297.2 Da    PI: 10.2283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
     OB01G15870.1 127 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 171
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.454120176IPR017930Myb domain
SuperFamilySSF466898.97E-19121177IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-18123175IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-11124170IPR009057Homeodomain-like
SMARTSM007177.0E-12124174IPR001005SANT/Myb domain
CDDcd001671.79E-10127172No hitNo description
PfamPF002491.1E-12127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCTG HRSTQSSGSG SYGGGGGGGA GGVRLFGVQL HVGASPLKKC  60
FSMECLSSSP SPAYYAAAAA VAASNSSPTV STSSSLVSVE ETGEKMANGY LSDGLMARAQ  120
ERKKGVPWTE EEHRKFLVGL EKLGKGDWRG ISRHFVTTRT PTQVASHAQK YFLRQSSLTQ  180
KKRRSSLFDV VENAEKAPSV NEMGFPALSL GISSRPEPAE AMLPPPSLTL TPSCSPAAAA  240
PRIHPSSLMV AKPQVQPDLE LKISTTRQND QPGSSPRTPF FGTIRVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8419920.0CT841992.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643865.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLJ3KX810.0J3KX81_ORYBR; Uncharacterized protein
STRINGOB01G15870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-49MYB_related family protein