PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G15870.1 | ||||||||
Common Name | LOC102700935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 30297.2 Da PI: 10.2283 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 127 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky OB01G15870.1 127 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 171 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.454 | 120 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-19 | 121 | 177 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-18 | 123 | 175 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 124 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 124 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-10 | 127 | 172 | No hit | No description |
Pfam | PF00249 | 1.1E-12 | 127 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCTG HRSTQSSGSG SYGGGGGGGA GGVRLFGVQL HVGASPLKKC 60 FSMECLSSSP SPAYYAAAAA VAASNSSPTV STSSSLVSVE ETGEKMANGY LSDGLMARAQ 120 ERKKGVPWTE EEHRKFLVGL EKLGKGDWRG ISRHFVTTRT PTQVASHAQK YFLRQSSLTQ 180 KKRRSSLFDV VENAEKAPSV NEMGFPALSL GISSRPEPAE AMLPPPSLTL TPSCSPAAAA 240 PRIHPSSLMV AKPQVQPDLE LKISTTRQND QPGSSPRTPF FGTIRVT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G15870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841992 | 0.0 | CT841992.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107I07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643865.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | J3KX81 | 0.0 | J3KX81_ORYBR; Uncharacterized protein | ||||
STRING | OB01G15870.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-49 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102700935 |