PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G15830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 10752.9 Da PI: 4.253 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 14 | 40 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT.-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWkt 26 rg+W++eEd l d+++++G+g +W + OB01G15830.1 14 RGPWSPEEDAALRDYIQRHGTGgNWIS 40 89********************96644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-10 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-6 | 9 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.713 | 9 | 38 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 9.0E-7 | 14 | 41 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MGRTPCCDRE AVKRGPWSPE EDAALRDYIQ RHGTGGNWIS LPAKAASNWS ADTGVVVGGG 60 GAGLFPDFCM SSDLTAGAAT AEDDHFLGGY YYPLDPSLSL VE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G15830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF474135 | 2e-50 | AF474135.1 Oryza sativa typical P-type R2R3 Myb protein gene, complete cds. | |||
GenBank | AK109125 | 2e-50 | AK109125.1 Oryza sativa Japonica Group cDNA clone:002-155-D04, full insert sequence. | |||
GenBank | AP002743 | 2e-50 | AP002743.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0710E05. | |||
GenBank | AP002746 | 2e-50 | AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11. | |||
GenBank | AP014957 | 2e-50 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY459339 | 2e-50 | AY459339.1 Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene region. | |||
GenBank | CP012609 | 2e-50 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696839.1 | 2e-34 | PREDICTED: pre-mRNA-splicing factor CEF1-like | ||||
TrEMBL | J3KX77 | 3e-69 | J3KX77_ORYBR; Uncharacterized protein | ||||
STRING | OB01G15830.1 | 5e-70 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-22 | MYB family protein |