PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15780.1
Common NameLOC102699541
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 424aa    MW: 47410 Da    PI: 7.6933
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1141.5e-35431851128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 
                   lp+G++F+Ptd+el+ e+L++kv+++       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + 
  OB01G15780.1  43 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqKGET 137
                   799************.99******9996775553333333666646**********.555666799******************7566666443377 PP

           NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OB01G15780.1 138 RWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185
                   8************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3938204IPR003441NAC domain
PROSITE profilePS5100534.34243204IPR003441NAC domain
PfamPF023653.1E-1644185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNRGHISSSE LIDAKLEERR ISTAKHCPSC GNKLDCKPDW VGLPAGVKFD PTDQELIEHL  60
EAKVREEGSR SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSKHFFH RPSKAYTTGT  120
RKRRKIQTEC DVQKGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM  180
HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSSDRGGAA SAATTAQAEQ RRRDSGSGSC  240
SSRDHEVSAT SYPAGYAVAA AVEMQHLKHA ADHFSFAPFR KSFEEVGVSA DQVPSNQLGR  300
SEQQHAGQEQ QPHRPLLATT TAVPATAFLI SRPTNPAVSS IVPPAMQHAS VVLDHDQFHV  360
PAILLHHDKF QQQQKLDRRS AGLEELIMGC TSSSTKGEAS IPHSQETEWP YPSYWPPDNQ  420
DHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-124118513140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643861.10.0PREDICTED: protein ATAF2 isoform X2
RefseqXP_015688178.10.0PREDICTED: protein ATAF2 isoform X2
SwissprotQ9M0F81e-154NAC75_ARATH; NAC domain-containing protein 75
TrEMBLJ3KX720.0J3KX72_ORYBR; Uncharacterized protein
STRINGOB01G15780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-118NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]