PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G15640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27701.8 Da PI: 7.8397 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 2 | 37 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky OB01G15640.1 2 FLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 37 77789******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.943 | 1 | 42 | IPR017930 | Myb domain |
CDD | cd00167 | 0.00113 | 1 | 38 | No hit | No description |
TIGRFAMs | TIGR01557 | 5.7E-12 | 1 | 41 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.38E-9 | 1 | 42 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 2 | 36 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MFLMGLQKLG KGDWRGISRN FVVSRTPTQV ASHAQKYFIR QTNSSRRKRR SSLFDMVPEM 60 PMDESPVVAE QLMLCSTQDE TTNSNQLPML HLVKQKEPEF ARHLSDLQLR KHEDSEFTEP 120 SLAALDLEMN HTVPFKAKSV LTMPTFYPAL IPVPLTLWPP NVANVDEAGT THEILKPTPV 180 NGKEINKADE VVGMSKLSIG EGISDTIQPS ALSLQLTGPT NTRQSAFHVN PPMAGPDLIK 240 RNNSPIHAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G15640.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071611 | 0.0 | AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645587.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | J3KX58 | 0.0 | J3KX58_ORYBR; Uncharacterized protein | ||||
STRING | OB01G15640.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 4e-48 | MYB_related family protein |