PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB01G14220.1 | ||||||||
Common Name | LOC102706228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25483.8 Da PI: 7.7814 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 30 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el+++ OB01G14220.1 30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAA 126 7**********************************************************************************************99 PP DUF260 98 kee 100 ++e OB01G14220.1 127 HAE 129 987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.503 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-43 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MASSSSTNNS AISTVVASGA ATTTPGAGSP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA 60 NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ 120 KELDAAHAEL LRYACGEVGI PTALPVTAAP RLAAAMPAPG QLAAVSAGMY GSRRLGVVDG 180 GGIAPPSPHA GCYYARNNNA GSIGADVAPV LPYASVANWT VNAISTTTTN SGSESIGMDH 240 KEGGDSSM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-85 | 20 | 149 | 1 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-85 | 20 | 149 | 1 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB01G14220.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB200238 | 0.0 | AB200238.1 Oryza sativa Japonica Group CRLL4 mRNA for LOB domain protein, complete cds. | |||
GenBank | AK105527 | 0.0 | AK105527.1 Oryza sativa Japonica Group cDNA clone:001-127-G05, full insert sequence. | |||
GenBank | AP002912 | 0.0 | AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10. | |||
GenBank | AP003339 | 0.0 | AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643801.2 | 0.0 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Refseq | XP_015698431.1 | 0.0 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Swissprot | Q9FML4 | 8e-69 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | J3KWR6 | 0.0 | J3KWR6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G14220.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-64 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102706228 |
Publications ? help Back to Top | |||
---|---|---|---|
|