PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G14210.1
Common NameLOC102704300
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 259aa    MW: 27864.1 Da    PI: 9.3778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G14210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G  +W++++   g+ R++k+c++rw +yl
     OB01G14210.1 30 KGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYL 77
                     678*******************************************97 PP
2Myb_DNA-binding461.3e-1483125145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rgr++++E+ l++ ++ +lG+  W+ Ia++++ gR+++++k++w+
     OB01G14210.1  83 RGRFSQQEEALILALHDKLGNS-WSQIAARLP-GRSDNEIKNFWN 125
                      89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-222480IPR009057Homeodomain-like
PROSITE profilePS5129415.9722577IPR017930Myb domain
SuperFamilySSF466893.59E-2728124IPR009057Homeodomain-like
SMARTSM007179.3E-112979IPR001005SANT/Myb domain
PfamPF002496.6E-143077IPR001005SANT/Myb domain
CDDcd001671.62E-93377No hitNo description
PROSITE profilePS5129424.57378132IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2581132IPR009057Homeodomain-like
SMARTSM007172.9E-1482130IPR001005SANT/Myb domain
PfamPF002492.4E-1383125IPR001005SANT/Myb domain
CDDcd001677.75E-1085125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRLVVQQQQ QQRRLQEEGC CSEKKKKLRK GLWSPEEDER LATHIARFGV SCWSSVPDLA  60
GLQRCGKSCR LRWMNYLRPD LKRGRFSQQE EALILALHDK LGNSWSQIAA RLPGRSDNEI  120
KNFWNARLRK KLRQTESSSS TAAAAGPRRG ETDRSRQPPP EAFNTFSHRS AHNDRPTPAA  180
AAHIAAAAVV EAPAATAGAV LAENAGDRDA GAAEVARGHV GGGGGDDDGF LAGLLGGDYL  240
DGGHGDGFSF LGGGGHVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272813225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132RLRKKLR
2127133LRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G14210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741391e-115AF474139.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0029121e-115AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033391e-115AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149571e-115AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593431e-115AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126091e-115CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645537.10.0PREDICTED: myb-related protein Hv33-like
SwissprotQ8VZQ22e-57MYB61_ARATH; Transcription factor MYB61
TrEMBLJ3KWR50.0J3KWR5_ORYBR; Uncharacterized protein
STRINGOB01G14210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-58myb domain protein 86
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]