PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G12730.1 | ||||||||
Common Name | LOC102712018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32278.3 Da PI: 9.811 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 29 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 +W++eE +++ +a + l + +W+++ar ++ gR+ ++ s++ + OB01G12730.1 29 KWSPEENKQFERALAGLDLRcpDWDKVARAIP-GRSVIEVMSHFKD 73 8*****************99************.**********987 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 145 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky OB01G12730.1 145 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 189 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.75 | 25 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 9.2E-5 | 26 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-7 | 29 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-9 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.63E-7 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 18.359 | 138 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.21E-18 | 139 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-17 | 141 | 192 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-13 | 142 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 142 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.46E-12 | 145 | 190 | No hit | No description |
Pfam | PF00249 | 9.8E-13 | 145 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MMRDAYMEVL PPMDHYASRG NWFMPPPRKW SPEENKQFER ALAGLDLRCP DWDKVARAIP 60 GRSVIEVMSH FKDLELDVQQ IENGMVPFPV YAPGGGGGGG AFTLQWDGSG GHGVGDFRNA 120 YRFGGGGGKR HFGRTPEQER KKGVPWTEEE HKLFLLGLKK YGKGDWRNIS RNFVQTRTPT 180 QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLTDDRPPS PSQSLITNQS NTAVAPYSST 240 SDVKPQNAAN ASFNSPSRTL GMPAYGMGLQ DQGLQCGGPL HDQLAASRSI LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-14 | 28 | 96 | 9 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G12730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067964 | 0.0 | AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence. | |||
GenBank | EU837250 | 0.0 | EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643740.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 5e-80 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | J3KWB7 | 0.0 | J3KWB7_ORYBR; Uncharacterized protein | ||||
STRING | OB01G12730.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-64 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102712018 |
Publications ? help Back to Top | |||
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