PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G12600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 324aa    MW: 36279.8 Da    PI: 9.0573
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G12600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.6e-135199155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  s+ykGV   + +grW A+I++      r  r++lg+f  +e Aa+a++ a+++++g
  OB01G12600.1 51 SRYKGVVPQP-NGRWGAQIYE------RhSRVWLGTFPDEEAAARAYDVAALRFRG 99
                  78****9888.8*********......44*************************98 PP
2B390.99.6e-29163259185
                   EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                   f+k+ tpsdv+k++rlv+pk+ ae+h               + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+ +
  OB01G12600.1 163 FEKAVTPSDVGKLNRLVVPKQQAEKHfpfplrrssdaaAAATGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSQS 259
                   89******************************9998885566799*************************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1651105IPR016177DNA-binding domain
PfamPF008474.6E-85199IPR001471AP2/ERF domain
CDDcd000181.47E-1351105No hitNo description
PROSITE profilePS5103220.50852107IPR001471AP2/ERF domain
SMARTSM003804.7E-2552113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1952105IPR001471AP2/ERF domain
PRINTSPR003679.9E-55364IPR001471AP2/ERF domain
PRINTSPR003679.9E-57389IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.8E-38159279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29160274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-27161256No hitNo description
SMARTSM010194.0E-20163272IPR003340B3 DNA binding domain
PfamPF023626.5E-26163267IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915163273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEQEGMVVSC NSGGSSSTES KPEDLVAMEE DEFQDLGGGH QAVELRVRPS SRYKGVVPQP  60
NGRWGAQIYE RHSRVWLGTF PDEEAAARAY DVAALRFRGR EAVTNRVTPE GASAGVLAFL  120
AAHSKAEIVD MLRKHTYDDE LQQGLRRGAR AQPTPRWARE PLFEKAVTPS DVGKLNRLVV  180
PKQQAEKHFP FPLRRSSDAA AAATGKGVLL NFEDGDGKVW RFRYSYWNSS QSYVLTKGWS  240
RFVREKGLRP GDTVAFSQSA WGTDKHLLID CKKMQRNQET HAIADDEARV VKLFGVDIAG  300
DKGVPQRICD SQKLQTVWDS FWQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4716027211115DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G12600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645486.10.0PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-155Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLJ3KWA40.0J3KWA4_ORYBR; Uncharacterized protein
STRINGOB01G12600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-95related to ABI3/VP1 2