PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G11960.1
Common NameLOC102721203
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 342aa    MW: 37092.1 Da    PI: 4.583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G11960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12117158247
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                    y+GVr +k +g+W+AeIr  +     +  r +lg+f ta+ A +a+ 
  OB01G11960.1 117 SYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFETADAASAAYQ 158
                   6******99.**********55.....45999*******666666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.161117175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18117168IPR001471AP2/ERF domain
SMARTSM003801.9E-12117180IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-14117166IPR016177DNA-binding domain
PfamPF008473.8E-7117158IPR001471AP2/ERF domain
CDDcd000181.10E-13118149No hitNo description
PRINTSPR003676.2E-8118129IPR001471AP2/ERF domain
PRINTSPR003676.2E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSSAAFSRPS QPPPPPLAAS LQPRRRVRVV  60
FEDPDATDSD SDGEDDAGAS KKRYFELFIG KPASTKQASP ASTVAAYANV GKVGSTSYRG  120
VRLRKWGKWA AEIRNPFTGH REWLGTFETA DAASAAYQSA SRSFAEEKRR RGQRAASSAS  180
PDHSATPTPT ASSSSSTSAA PFAHPSPSSV LEATTKPAPK PESPLPEQAA TPNLVEASNE  240
TAELPDDPEF YKDILRGLQL PDIDPMDFRA GLDALDISEA PAYMDGEQDI LFSEDMLLGD  300
FGEEDDLDLD DIGDDFCEDF PEIPSGYDFS RGDMFRQVDF CV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G11960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011330.0AK101133.1 Oryza sativa Japonica Group cDNA clone:J033026F23, full insert sequence.
GenBankAK1196450.0AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence.
GenBankAP0025260.0AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418280.0AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds.
GenBankEU8372590.0EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds.
GenBankKC9883300.0KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643693.10.0PREDICTED: ethylene-responsive transcription factor ERF036-like
TrEMBLJ3KW400.0J3KW40_ORYBR; Uncharacterized protein
STRINGOB01G11960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-11ERF family protein