PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G11830.1

Common Name

LOC102721775

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 290aa MW: 30907.8 Da PI: 7.0778

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G11830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.2	4e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+++ OB01G11830.1 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQSAV 100 6***********************************************************************************************9 PP DUF260 93 elallk 98 e +l++ OB01G11830.1 101 ESVLRG 106 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.6E-101	1	287	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.577	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP 120 PLPTCDIRHV GRRGDHGASP LADLHRLDNS SRPKFKRPGG AGHRSDVSSF ELVFSKPSAA 180 MAIDVVRQAQ PLNWAPGALS HESASHDAVP PESEGHSNDT ADTVDGSHVS QSEPEPRATE 240 VHDAGLDLTL GLQPAPVQKA EPADSDGSNH DRKEKPVELG LAISTSVAAQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G11830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002538	1e-131	AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBank	AP014957	1e-131	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643695.1	0.0	PREDICTED: LOB domain-containing protein 40
TrEMBL	J3KW27	0.0	J3KW27_ORYBR; Uncharacterized protein
STRING	OB01G11830.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	1e-68	LOB domain-containing protein 40

Link Out ? help Back to Top
Entrez Gene	102721775