PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G10500.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 323aa MW: 37823.1 Da PI: 7.9241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G10500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	12	35	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C C + F+ k++L+ H+rt H OB01G10500.1 12 RCAACFREFKKKEHLVEHMRTslH 35 6999****************9777 PP
2	zf-C2H2	11.9	0.00068	41	59	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C Cgk++++ + L+ H+ OB01G10500.1 41 RCAVCGKHCRSLDALRDHL 59 6*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.427	11	40	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	13	35	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDSSSDAHRR NRCAACFREF KKKEHLVEHM RTSLHSPHDP RCAVCGKHCR SLDALRDHLT 60 GALPKPECAA AFVSRGCELC LDVLPTDTAR RSHTRPXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAW RQRELERMSP 300 EELLQLSTTD YYCWCLDATP TTT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G10500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002845	3e-89	AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBank	AP002863	3e-89	AP002863.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0005A05.
GenBank	AP014957	3e-89	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2146	5	5