PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G10340.1
Common NameLOC102705754
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 393aa    MW: 42311.7 Da    PI: 8.7782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G10340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.9e-052823201255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  OB01G10340.1 282 RKEKLGDRISALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 320
                   7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.89270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.67E-6280324No hitNo description
SuperFamilySSF474596.02E-11280331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8284327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMASSSSSSS LCDHLLQDDL PWPSMPFAPA LQAFGLNPQW SQPLVLDQLN SPELESLLSV  60
QGHHYSQLAS APTLNPPQAQ LSTVLMMQEL GFQWSSYAVA ADHTTATSMN NVMKEEELRR  120
RTDQSLSSTS SYGTTTTTIY TDMHQLAANL DGAVLPSINV SRLHKPAGAG DALPETMLAT  180
SISCKRQAAA ASVVGHSGMR DEHVPWTYGP PAHLIQGPSM DDIHTLQMKR NTNAAATAAK  240
GRSGCHGSST ERRSSTELPS SSKKPRLESR SSSALIPSFK VRKEKLGDRI SALQQLVSPF  300
GKTDTASVLM EAIGYIKFLQ DQVETLSGPY LRSSKNSKKA CRAAQQRKGA SNGGEAAAKL  360
DLRSRGLCLV PLSCTSYVTN ENGVWPPPNF RGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G10340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643643.10.0PREDICTED: uncharacterized protein LOC102705754
TrEMBLJ3KVM80.0J3KVM8_ORYBR; Uncharacterized protein
STRINGOB01G10340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-44bHLH family protein