PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G10300.1

Common Name

LOC102714517

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 321aa MW: 35485.6 Da PI: 6.7871

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G10300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.7e-55	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ +ekewyf++++d+ky+tg r+nrat++gyWkatgkdke+++++ OB01G10300.1 11 LPPGFRFHPTDEEIITFYLTPKVLDSRGFCVAAIGEVDLNKCEPWDLPgKAKMIGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEIFRHH 107 79*******************9999666588***********544445899**********************************99 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + lvg+kktLvfykgrapkg kt+Wvmheyrl OB01G10300.1 108 HLLVGMKKTLVFYKGRAPKGDKTNWVMHEYRL 139 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-62	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.441	11	166	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGEQQQQQPE LPPGFRFHPT DEEIITFYLT PKVLDSRGFC VAAIGEVDLN KCEPWDLPGK 60 AKMIGEKEWY FYCQKDRKYP TGMRTNRATE AGYWKATGKD KEIFRHHHLL VGMKKTLVFY 120 KGRAPKGDKT NWVMHEYRLA DASSSAADPT PSPRHDDWAV CRIFHKSSGI KKPLMPVPMP 180 MPVQLQATYH QQMAMGIIPM PMQPMVDLQV DDFPNGLPPL MAPAPPPPGS SYSTLPGFPG 240 SGLPLPMNGG GQQFGNPPAP MPQFYHQQMD GGYVGEPVSE PSSLVSQDTE QNSNNAAAAA 300 AAEISSVACN MVAMDGAMWK Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	1	172	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	1	172	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	1	172	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	1	172	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	1	172	7	174	NAC domain-containing protein 19
3swm_B	1e-51	1	172	7	174	NAC domain-containing protein 19
3swm_C	1e-51	1	172	7	174	NAC domain-containing protein 19
3swm_D	1e-51	1	172	7	174	NAC domain-containing protein 19
3swp_A	1e-51	1	172	7	174	NAC domain-containing protein 19
3swp_B	1e-51	1	172	7	174	NAC domain-containing protein 19
3swp_C	1e-51	1	172	7	174	NAC domain-containing protein 19
3swp_D	1e-51	1	172	7	174	NAC domain-containing protein 19
4dul_A	1e-51	1	172	4	171	NAC domain-containing protein 19
4dul_B	1e-51	1	172	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G10300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242268	1e-167	AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence.
GenBank	GU120353	1e-167	GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds.
GenBank	JN944365	1e-167	JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645428.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	2e-79	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	J3KVM4	0.0	J3KVM4_ORYBR; Uncharacterized protein
STRING	OB01G10300.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-78	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Entrez Gene	102714517

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]