PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G10170.1
Common NameLOC102702501
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 446aa    MW: 49387.6 Da    PI: 4.3884
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G10170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC78.96.5e-2522121298
         NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                   +  fw ++   ie+++df +h +P+ar+kki  +++   m++ + P++lsk celf+ el++r+w  a++ +r  +   dia+a+++ + +dflvdi
  OB01G10170.1  22 MDEFWRDRqkdIETTKDFSEHVIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAIRAWACAQSHNRCIILDIDIAEAIASIESYDFLVDI 118
                   66899765566*************************************************************************************9 PP

         NF-YC  96 vpr 98 
                     +
  OB01G10170.1 119 LHN 121
                   876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001255.4E-827106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.36E-1528124IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.1E-1845119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEQTLDVCRL SRPPMPMAQQ HMDEFWRDRQ KDIETTKDFS EHVIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAIRAWACAQ SHNRCIILDI DIAEAIASIE SYDFLVDILH  120
NHRAKYNSTP CSVPTTKRCR LVDQPSISHL PQQHQRPQFA PTYTSTIPMT PNLMPPISHY  180
RPALFSSLPQ EVSVLMAPTP NVNGSMLLVH NIANGLGLQG NNINVVTNNN VTDNTIDSSA  240
LLSTTNSPTL LESSGALLRT PNYDSYICMM GMINSSDASG SGTSNVVVAN QTSLALPGHF  300
DPTIILESLC PSFLPRDNDD MIVAMLEDAH NSNTMCVAND VVNDTAMVLN GQQDQHERET  360
NAECDDQNEI YGNIDVETIN ATTTDGNKCS ISWDELGMAD DSLLETFLEE LQLRKDDALD  420
TGIALDKNSH FDDIVWSNPS TSNGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-1531119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G10170.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643631.10.0PREDICTED: uncharacterized protein LOC102702501
TrEMBLJ3KVL10.0J3KVL1_ORYBR; Uncharacterized protein
STRINGOB01G10170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-17nuclear factor Y, subunit C2