PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0171G10030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 120aa MW: 12505 Da PI: 11.3241 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 37.2 | 6.1e-12 | 20 | 45 | 35 | 60 |
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkk 60 +CrryW +GG+lrn+P+G+++ k+ + OB0171G10030.1 20 SCRRYWMHGGSLRNIPIGSSTCKRPR 45 8******************9888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-4 | 20 | 40 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-7 | 20 | 43 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MEIYTTACCR DGVVKKRSTS CRRYWMHGGS LRNIPIGSST CKRPRAARPT HAAVAATASA 60 GAATTPRFPS SSSSSSQLQQ ATNATAAANQ LVQEAVAMSD DGSHRAVPRT RSHGAGGACR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0171G10030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3KVF9 | 8e-81 | J3KVF9_ORYBR; Uncharacterized protein | ||||
STRING | OB0171G10030.1 | 1e-81 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21080.1 | 1e-06 | Dof-type zinc finger domain-containing protein |