PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0157G10010.1
Common NameLOC102708679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 801aa    MW: 90006 Da    PI: 5.0356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0157G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07649690144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r +W++ + +l++++ +q+G++ ++ I + ++  ++++q++ ++
   OB0157G10010.1 649 RAKWSKSDTDLFYQGLRQFGSD-FAMIQHLFP-DKSRNQVRQKF 690
                      569*******************.*********.********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-9640696IPR009057Homeodomain-like
PfamPF159631.0E-24642725No hitNo description
SMARTSM007172.9E-8648696IPR001005SANT/Myb domain
CDDcd001674.85E-6651691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MIDDETDFGN IIDAPAEGQT AAKFRPKARA KPRKASVPSK SLTHPIVEST YEKVETINKY  60
NTSQEQSVDK KTVSLGCHGS ETVGDACASE GMLDTPIDVP TVSVGLVSNL DVTLDSSTLC  120
TSAVHKFSQN EEHNDDLSHV ATPKESMVVS DTQAPLTCSN GKTIDELTDF EGLCDDAEVE  180
EERIPKFQPK IRAKINKATL KSQRAKQNVG ASTVDAPSRN EDDKNQAGCN DKQLDTLRHQ  240
GSVEISYPQA HLGAHNRAVN DFANSDGIEE PAQEERAAKS QPKLQPKLER TLPDVTETSP  300
AASVATPEVR GFDADLASQD TEDTHREGLN DGLCQKYMDE EANTVSGTGP PQDMDATVDL  360
DYHTEMVNPH PDGIRPIIGE PSGEATVKFQ PYVRRKKGGK SVSFSLPNVS DPVVTTEMPS  420
DHIIEQEPKG DARETGTSMK LRSRKKIQKD VITKHTADDN MDELVEPPSD ENDNDSGDEY  480
TARGKQKGRR KSMEKIINKE PLRGTKRASG DSAMEESQKQ KVRKNKSKAS SRDQNKTPKD  540
LSVEQTEKKL THRIRQKRMK EVKTLLETPD HEIDRMKLSV THLRLLQEAR ERSKGKDPSG  600
PSSNNSFQFE DMDDGYNQQD NWDNDRTENH VVGNATKLNY HSYMNRQTRA KWSKSDTDLF  660
YQGLRQFGSD FAMIQHLFPD KSRNQVRQKF KAEEKRHPMQ VHDAIMHRSR DNLYFKKVMK  720
QLNIEDAQPD INKTHGQEGA SNQEDPEIKK LSDEFINEEE ENGENWSDKE RDTQRSEVEE  780
KEHISTNDDD DDDLGDVFDW C
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0157G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665058.10.0PREDICTED: uncharacterized protein LOC102708679
TrEMBLJ3KVE10.0J3KVE1_ORYBR; Uncharacterized protein
STRINGOB0157G10010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-38MYB_related family protein