PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0157G10010.1 | ||||||||
Common Name | LOC102708679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 801aa MW: 90006 Da PI: 5.0356 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 649 | 690 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ + +l++++ +q+G++ ++ I + ++ ++++q++ ++ OB0157G10010.1 649 RAKWSKSDTDLFYQGLRQFGSD-FAMIQHLFP-DKSRNQVRQKF 690 569*******************.*********.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-9 | 640 | 696 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 1.0E-24 | 642 | 725 | No hit | No description |
SMART | SM00717 | 2.9E-8 | 648 | 696 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.85E-6 | 651 | 691 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MIDDETDFGN IIDAPAEGQT AAKFRPKARA KPRKASVPSK SLTHPIVEST YEKVETINKY 60 NTSQEQSVDK KTVSLGCHGS ETVGDACASE GMLDTPIDVP TVSVGLVSNL DVTLDSSTLC 120 TSAVHKFSQN EEHNDDLSHV ATPKESMVVS DTQAPLTCSN GKTIDELTDF EGLCDDAEVE 180 EERIPKFQPK IRAKINKATL KSQRAKQNVG ASTVDAPSRN EDDKNQAGCN DKQLDTLRHQ 240 GSVEISYPQA HLGAHNRAVN DFANSDGIEE PAQEERAAKS QPKLQPKLER TLPDVTETSP 300 AASVATPEVR GFDADLASQD TEDTHREGLN DGLCQKYMDE EANTVSGTGP PQDMDATVDL 360 DYHTEMVNPH PDGIRPIIGE PSGEATVKFQ PYVRRKKGGK SVSFSLPNVS DPVVTTEMPS 420 DHIIEQEPKG DARETGTSMK LRSRKKIQKD VITKHTADDN MDELVEPPSD ENDNDSGDEY 480 TARGKQKGRR KSMEKIINKE PLRGTKRASG DSAMEESQKQ KVRKNKSKAS SRDQNKTPKD 540 LSVEQTEKKL THRIRQKRMK EVKTLLETPD HEIDRMKLSV THLRLLQEAR ERSKGKDPSG 600 PSSNNSFQFE DMDDGYNQQD NWDNDRTENH VVGNATKLNY HSYMNRQTRA KWSKSDTDLF 660 YQGLRQFGSD FAMIQHLFPD KSRNQVRQKF KAEEKRHPMQ VHDAIMHRSR DNLYFKKVMK 720 QLNIEDAQPD INKTHGQEGA SNQEDPEIKK LSDEFINEEE ENGENWSDKE RDTQRSEVEE 780 KEHISTNDDD DDDLGDVFDW C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0157G10010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006665058.1 | 0.0 | PREDICTED: uncharacterized protein LOC102708679 | ||||
TrEMBL | J3KVE1 | 0.0 | J3KVE1_ORYBR; Uncharacterized protein | ||||
STRING | OB0157G10010.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2595 | 29 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 3e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102708679 |