PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0093G10070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 32184.4 Da PI: 8.4984 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 23 | 60 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r rW+ eE++++++a ++G + Wk+I + ++t+ q+ OB0093G10070.1 23 RERWSGEEHDRFLHALMLFGRD-WKRIEGFVA-TKTATQV 60 78******************77.*******99.9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.87E-9 | 12 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-7 | 22 | 60 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-6 | 23 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 23 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.60E-5 | 25 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAAMAAPVLG KKTRKPYTIT RPRERWSGEE HDRFLHALML FGRDWKRIEG FVATKTATQV 60 PIDFIHPCVL LALCCKINGG FRIGDRVGFL NSRVSLCKPL IDLPWFIMQI RSHAQKHFLK 120 ARKFGLAGGL PPPPLHPRRA ALLPAKAVTA DTISPWTPSA IAPPPWPPAG GAPPSSAVQR 180 SMSDWSPACY APEDPFRPLI HADDCSFIEA PNCSGSGEAW IADAAFLPDE TILLPISPDD 240 LGFAQVYKFV GDLFGSGEPR PVEAQLRRLQ AMDPAISETI LLVLRNLEAN LLSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0093G10070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124144 | 7e-44 | AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence. | |||
GenBank | AP014961 | 7e-44 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 7e-44 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664992.1 | 1e-140 | PREDICTED: protein REVEILLE 6-like | ||||
TrEMBL | J3KUZ4 | 0.0 | J3KUZ4_ORYBR; Uncharacterized protein | ||||
STRING | OB0093G10070.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 5e-18 | MYB_related family protein |