PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0072G10050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 383aa    MW: 41285.6 Da    PI: 10.5766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0072G10050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05279301123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cg+ F +k+ L+rH++ H
  OB0072G10050.1 279 HDCTKCGRDFLSKDALNRHMQHH 301
                     56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-5278306No hitNo description
SMARTSM003550.0062279301IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926279306IPR007087Zinc finger, C2H2
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAPVPVRIPS PESKPSAASH HFHAKRRSLC GPAEGGERCA IIGGQRRGTH ARWRRGSQSM  60
PSSPPHVGAN TDELVGGCYG QQSSRSNSSP GAAPTEGWIQ GAAPAQSHSD AIQVEGDGGR  120
VQVRLASSSS VVVPTDLSSN SYLVTMVEKK RKSGESSLKN ADDLGTIGLL ANWASTNHQS  180
QRNVFHGLEE APELPRRAHI EAHGKAQLVS LSLTLGQHEQ AGLTLAMKPP TIPPIGHMGN  240
NKETWATKMR KGTRYASSSW TPMLRDLHSW ANKKRAMLHD CTKCGRDFLS KDALNRHMQH  300
HYPGQPIGLV AGTSTGVFLS TGIAMAVNAT SIEGRSHPIT FSVTNNKEVK PQRMAGSVLN  360
NIHRGFRLFG VNIVESPREE PMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0072G10050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3KUQ60.0J3KUQ6_ORYBR; Uncharacterized protein
STRINGOB0072G10050.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162161213