PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0046G10040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 564aa    MW: 59078.9 Da    PI: 7.0546
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0046G10040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.6e-11136192155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OB0046G10040.1 136 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 192
                     57*******************4444.2455535555.779999**************98 PP
2AP250.45.6e-16237286355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  OB0046G10040.1 237 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 286
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-17136202No hitNo description
SuperFamilySSF541711.7E-14136202IPR016177DNA-binding domain
PfamPF008472.9E-8136192IPR001471AP2/ERF domain
SMARTSM003805.0E-22137206IPR001471AP2/ERF domain
PROSITE profilePS5103217.082137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11137201IPR001471AP2/ERF domain
PRINTSPR003672.6E-6138149IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17235296IPR016177DNA-binding domain
CDDcd000181.43E-22235296No hitNo description
PROSITE profilePS5103218.993236294IPR001471AP2/ERF domain
SMARTSM003803.2E-32236300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-18236295IPR001471AP2/ERF domain
PfamPF008477.9E-11237286IPR001471AP2/ERF domain
PRINTSPR003672.6E-6276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MCSGWGGSGK GGGVAAGGEG TPKLEDFLGM QQETAAAGAP IRGVAGGGGS SVGLSMIKNW  60
LRSQPAPAGA AAAGVGGGAA ALPGSMSMSP GAGPSPGGMG KAADNGEATG AAAGAAAVEA  120
AQRVKTAVDT FGQRTSIYRG VTKHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA  180
RAYDLAALKY WGATTTTNFP VSNYEKELDD MKNMSRQEYV ASLRRKSSGF SRGASMYRGV  240
TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYNV  300
KSIIESSNLP IGGGTTRRLK DSSDQTDNNA MGINVNTSAN NAVSSQFFTD AGMGNYGSQH  360
HGYNGWSPIS SMQPILPLQY GAAHGEPRPW CKQEQDSSVV AAAQSLHNLH HFSSLGYTHN  420
FFEQSDAVPD VSSFVDAPSR SGGYSSFRYN GAAANGAGFH GGISYAMPVA AAVDHGHGIH  480
GYGGEDGVVG VETAHDHLYG SRDVYYLPEG SLVADAGKDG DYGQAVGGNG SWVSPGPESE  540
MVEKDANVTT VCHGMPLFSV WNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0046G10040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698915.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLJ3KUB50.0J3KUB5_ORYBR; Uncharacterized protein
STRINGOB0046G10040.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-116AP2 family protein