PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0042G10100.1
Common NameLOC102712774
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 129aa    MW: 14699.4 Da    PI: 10.3643
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0042G10100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-072568348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++T+ +d+ l++++ +lG + Wk I r +  gRt   +k rw  ++
   OB0042G10100.1 25 PFTARDDDELLRLHCRLGDR-WKEIGRAVY-GRTSRILKRRWKELR 68
                     79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.947121IPR017930Myb domain
SuperFamilySSF466892.42E-16169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-6127IPR009057Homeodomain-like
SMARTSM007177.5E-42270IPR001005SANT/Myb domain
PROSITE profilePS512947.8372372IPR017930Myb domain
CDDcd001673.76E-42567No hitNo description
PfamPF139215.6E-62670No hitNo description
Gene3DG3DSA:1.10.10.607.3E-92867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MPRRSARSCR DRWRHHLARD LYHRPFTARD DDELLRLHCR LGDRWKEIGR AVYGRTSRIL  60
KRRWKELRRS GFAAAAAAAR KEKPTGAEDG DDNMVESDKE SSSQPESQGR LSLANALASS  120
FASCSLGDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762RILKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0042G10100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052004e-80AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149634e-80AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664837.11e-88PREDICTED: myb-related protein 315-like
TrEMBLJ3KU663e-87J3KU66_ORYBR; Uncharacterized protein
STRINGOB0042G10100.16e-88(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-09myb domain protein r1