PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0042G10090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 185aa MW: 20801.3 Da PI: 4.6408 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.6 | 3.9e-22 | 54 | 104 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t eq+ +Le +F+k+ +p +e+reeLAkklg++erqVk+WFqNrR+++k OB0042G10090.1 54 CHTCEQVMQLEGVFQKCTHPEEEQREELAKKLGIEERQVKFWFQNRRTRKK 104 6789*********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.46E-18 | 43 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 44 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 49 | 110 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-19 | 54 | 104 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.80E-18 | 58 | 104 | No hit | No description |
PRINTS | PR00031 | 6.7E-7 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-7 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDHGSFQQGS SDAHELDLPL AIMLGAEDGD DGIGDSAVDA HDAGGHAQGK RMKCHTCEQV 60 MQLEGVFQKC THPEEEQREE LAKKLGIEER QVKFWFQNRR TRKKVSDERR EGVVLEDENE 120 ALLAENKALK YAMQDMICFV CSSPVVVPAE ETVQQRYLRF LNKRLADELQ EATAVLNQIA 180 KDADA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0042G10090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3KU65 | 1e-134 | J3KU65_ORYBR; Uncharacterized protein | ||||
STRING | OB0042G10090.1 | 1e-135 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-26 | HD-ZIP family protein |