PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0039G10090.1
Common NameLOC102704477
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 327aa    MW: 35403.9 Da    PI: 5.9578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0039G10090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.2e-50111391129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL++kv+++++    ++ +vd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v+++
  OB0039G10090.1  11 LPPGFRFCPSDEELVCFYLRNKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRVVHEA 104
                     79*************************888.88***************87788899************************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++++vg++ktLvfy grap+g+kt+Wvmhe+rle
  OB0039G10090.1 105 aTRAVVGMRKTLVFYLGRAPNGHKTTWVMHEFRLE 139
                     77788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-598157IPR003441NAC domain
PROSITE profilePS5100557.53211157IPR003441NAC domain
PfamPF023657.7E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGLREMEST LPPGFRFCPS DEELVCFYLR NKVANHRVAS GTLVDVDLHA REPWELPEVA  60
KLTAEEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRV VHEAATRAVV GMRKTLVFYL  120
GRAPNGHKTT WVMHEFRLET PNSQPKEDWV LCRVFDKKKP SMTEADQQGS NGSDHFIAGA  180
ATGPSSPTTT TAAAAAPLLA GSSPDPTVVD RFDHHAALPP LMALMQGGED QMIAAAAGGS  240
SSSSALLNLA MLQYSFLEHR PPGVDDDAAA GPAPFGACRG GLGGGDGPPA LGAMGFEEHG  300
MGEIIEMEPP AWRHDGSGCL YRDELYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-49815814166NO APICAL MERISTEM PROTEIN
1ut4_B6e-49815814166NO APICAL MERISTEM PROTEIN
1ut7_A6e-49815814166NO APICAL MERISTEM PROTEIN
1ut7_B6e-49815814166NO APICAL MERISTEM PROTEIN
3swm_A8e-49815817169NAC domain-containing protein 19
3swm_B8e-49815817169NAC domain-containing protein 19
3swm_C8e-49815817169NAC domain-containing protein 19
3swm_D8e-49815817169NAC domain-containing protein 19
3swp_A8e-49815817169NAC domain-containing protein 19
3swp_B8e-49815817169NAC domain-containing protein 19
3swp_C8e-49815817169NAC domain-containing protein 19
3swp_D8e-49815817169NAC domain-containing protein 19
4dul_A6e-49815814166NAC domain-containing protein 19
4dul_B6e-49815814166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0039G10090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347010.0CT834701.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115P09, full insert sequence.
GenBankGQ2294850.0GQ229485.1 Oryza sativa Japonica Group NAM-domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664818.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ84TE61e-58NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLJ3KU350.0J3KU35_ORYBR; Uncharacterized protein
STRINGOB0039G10090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-75NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]