PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G19700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 313aa    MW: 32533.6 Da    PI: 8.4935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G19700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-15168214455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OBART12G19700.1 168 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 214
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-20168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-13169214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-15169218No hitNo description
SMARTSM003534.2E-17170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DSTAAAAYAT DVAGDSGAGA AFPSLQALRN ASAAGGGGGG  60
FRDLTVQVDQ VHRANSWSSS DSPGGGAATA AAGWSPHVTG GGRGHRPMSW NFSAASAQPT  120
TEDSGSAGGG GVVPALPQAM ETATARAAPV KKGGGGSSAA AAPGYVQDHI IAERRRREKI  180
NQRFIELSTV IPGLKKMDKA TILGDAVKYV KELQEKVKTL EEEDGGRAAA MVVRKSSCSG  240
RQCDGEGRGS RVPEMEVRVW ERSVLVRVQC GNARGLLVRL LSEVEELRLA ITHTSVMPFP  300
ASTVIITITA KAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-15168223863Transcription factor MYC2
5gnj_B5e-15168223863Transcription factor MYC2
5gnj_E5e-15168223863Transcription factor MYC2
5gnj_F5e-15168223863Transcription factor MYC2
5gnj_G5e-15168223863Transcription factor MYC2
5gnj_I5e-15168223863Transcription factor MYC2
5gnj_M5e-15168223863Transcription factor MYC2
5gnj_N5e-15168223863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERRRRE
2173178RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.11e-159transcription factor NAI1 isoform X2
TrEMBLA0A0D3HX210.0A0A0D3HX21_9ORYZ; Uncharacterized protein
STRINGOBART12G19700.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-31bHLH family protein