PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART12G18720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 899aa MW: 99823.9 Da PI: 6.3672 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 6.9e-24 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ OBART12G18720.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 221 99*****************************8544444..48************************************************..77 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OBART12G18720.1 222 DNNQLLLGIRRA 233 77778***9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-49 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-43 | 123 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.85E-22 | 131 | 232 | No hit | No description |
PROSITE profile | PS50863 | 12.703 | 132 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-25 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-22 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-34 | 258 | 341 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.44E-6 | 757 | 840 | No hit | No description |
Pfam | PF02309 | 2.8E-7 | 763 | 852 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.727 | 766 | 850 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 899 aa Download sequence Send to blast |
MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA 60 STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME 120 LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG 300 MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE 360 IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN 420 FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRSG DPSKQHPATL QYQQTHNLNS 480 GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE 540 LQQQQRQHVL QEQSNQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG 600 NSYPPLHLHN NFHNFSNQEA SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI 660 EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD 720 TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS 780 LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV 840 WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 13 | 362 | 38 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK121703 | 0.0 | AK121703.1 Oryza sativa Japonica Group cDNA clone:J033074F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619766.1 | 0.0 | auxin response factor 25 isoform X1 | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A0D3HWP7 | 0.0 | A0A0D3HWP7_9ORYZ; Auxin response factor | ||||
TrEMBL | I1R7U1 | 0.0 | I1R7U1_ORYGL; Auxin response factor | ||||
STRING | ORGLA12G0159700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART12G18720.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|