PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G18000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 320aa    MW: 33583.1 Da    PI: 9.7371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G18000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-14143189455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  OBART12G18000.1 143 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 189
                      8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16143201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17143196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.15E-12145193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFMNRQDPE ASGFFSDDDS GQTAAIAAAA AAAAAMENED FSYMLREFDY YTSSEDLFEL  60
MWQGGGGGGG ATGGGWRSPE AQDDRRAAPA PEKKQMEKMP AAASPTTTMN KDETSDDSGE  120
RKKKKASSAA GKASKHHHAA AGAHNLTEKR RRFKITERFR TLQRLVPGCD KSNQASTLDQ  180
TIQYMKSLQH QLKAMSVVGS PPALLYPAAV HPQSYMHPPP PPPPVAGAAP PVTMPMHPGM  240
VLAAPPPGAA PPPGPPATMM PFGAMLPYPP YPAVLLPPPA AATLYGRPPA AAPGVAARRH  300
GSSGGGRISK SSSSSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.15e-76transcription factor APG
TrEMBLA0A0D3HWF90.0A0A0D3HWF9_9ORYZ; Uncharacterized protein
STRINGOBART12G18000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-15phytochrome interacting factor 3