PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 378aa    MW: 39353.5 Da    PI: 8.617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14198245455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +    + K + a++L ++++Y+ksLq
  OBART12G17960.1 198 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 245
                      8*************************9....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-12198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-14198249No hitNo description
Gene3DG3DSA:4.10.280.101.9E-17198251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-13200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDRQDTEAAG SFTGDDSGQT AGIAAAAVEN DDLSYMLRGF DYYTSSEDLF ELMRQGGGGG  60
GACSFNQPPP LLPPAGIIVP GTTTTTLLPE QPVVDDHLPA AAAAPPSEEE MAAWLYPIVG  120
GHQVAAGGWL SPEARDDRRA APPAPEKKQM DNMPAVASPT TTMNKDEASD DSGERKKKKK  180
KASSAAGKAS RHRHAAGAHN LTEKRRRFKI TERFRTLQRL VPGCDNKSNQ ASTLDQTIQY  240
MKSLQHQLEA TSAVGSPAAA VLYPAAVHPQ SYMHPPAPPP PVAGAAAPVT MAPMPAGMVL  300
AAAPPGAAPP PGPPATMMPF GAMLPYPPYP AVLLPPPPAT LYGRPPAAAP SVAARRHGST  360
SGGARISKSS SSSLRKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179ERKKKKK
2174180RKKKKKK
3202207EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.11e-144transcription factor APG
TrEMBLA0A0D3HWF50.0A0A0D3HWF5_9ORYZ; Uncharacterized protein
STRINGOBART12G17960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-12phytochrome interacting factor 3-like 5