PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G17240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 35166.1 Da PI: 8.4955 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 183 | 238 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ OBART12G17240.1 183 KARRCWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 238 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.583 | 180 | 240 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 181 | 241 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.03E-17 | 181 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-26 | 183 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 185 | 236 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEVFRRELPI SVHLIADVIE WLKDEVEKQR LLRRRQVEAP AAAPPPEMFA PPATAKRKSA 60 ASAAAEGVKA EADANDKRSW MSSAQLWSCG SHTSTSTSNG GSVKKQQHKV SNAFVPLATS 120 PAFAKSLEKA DAATPLPAAV PDLSLSSRVA MADAPAFPAA PSATSSAVTD VAGAQRQQAV 180 QRKARRCWSP ELHRRFVAAL QRLGGPQAAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR 240 RASDGGGGGG DHQTVGGGLW PPPPEQYTTS QHSTSQSGSP QGPLQLTVSS SHAVSVTAGD 300 SCDGGEEEEE EDGKSGSYSW EMQNGARASS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-13 | 183 | 236 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 183 | 236 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 183 | 236 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 183 | 236 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-13 | 183 | 236 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 1e-158 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618787.1 | 1e-178 | transcription factor HHO6 | ||||
TrEMBL | I1R7H6 | 0.0 | I1R7H6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0148200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-29 | G2-like family protein |