PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 332aa    MW: 35276.3 Da    PI: 4.5789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1971120255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OBART12G17080.1  71 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 120
                      789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.90E-3070127No hitNo description
SuperFamilySSF541712.55E-1971128IPR016177DNA-binding domain
PROSITE profilePS5103219.55971128IPR001471AP2/ERF domain
PfamPF008477.5E-1471120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2771127IPR001471AP2/ERF domain
SMARTSM003804.6E-3571134IPR001471AP2/ERF domain
PRINTSPR003674.2E-87283IPR001471AP2/ERF domain
PRINTSPR003674.2E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAFHLQPHSL TQAKLAIDRS SSMPPSMATA RVASPSTDRK RKASSEDDID AAAAAAAALT  60
SPPAPARGRK RFVGVRQRPS GRWVAEIKDT IQKIRVWLGT FDTAEEAARA YDEAACLLRG  120
ANTRTNFWPR PSPPPAAVAP PETTTTPALP SKVTNLLLLR LKARNQQLVD AGAAAPQEAA  180
LLQLQQQTPA SCQEVFVRSH GEEYGFHVDD FLSDACSNEQ YSGDSSLGLD DDDGEVEDEE  240
EEELDFQFMD VAPGASSAAA EAGLGGEGAL CSPFEMVAAE LGGAVDVAAH DAMRQMDYER  300
KISASLYALT GVSECLRIRA AAARTISSST AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7724260.0AL772426.5 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7724270.0AL772427.4 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.21e-175ethylene-responsive transcription factor ERN1
TrEMBLA0A0D3HW530.0A0A0D3HW53_9ORYZ; Uncharacterized protein
STRINGOBART12G17080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11