PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G13720.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 350aa    MW: 38010.2 Da    PI: 7.0417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G13720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-153683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  OBART12G13720.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83
                     678*******************************************97 PP
2Myb_DNA-binding50.74e-1689132146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
  OBART12G13720.1  89 RGAFSPQEEDLIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3143183IPR017930Myb domain
SuperFamilySSF466891.72E-2834130IPR009057Homeodomain-like
SMARTSM007178.7E-113585IPR001005SANT/Myb domain
PfamPF002492.3E-133683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-223790IPR009057Homeodomain-like
CDDcd001672.60E-93983No hitNo description
PROSITE profilePS5129424.86784138IPR017930Myb domain
SMARTSM007172.4E-1588136IPR001005SANT/Myb domain
PfamPF002499.1E-1589132IPR001005SANT/Myb domain
CDDcd001674.77E-1191131No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2591138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRKPDCGGGG GAAKGGGALG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VSLHAILGNR WSQIAARLPG  120
RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGALLPLPDQ VCGVDTSPPP  180
PFFHDHSISI KQAYYGSTGA HHHHHAIAAM DGSSLIGDHH HHSSSILFGG ASVPPLLDHQ  240
TILNDDDDHP NKTGSNTTAA TLSSNITDNS NSNKNNSDNN NNISSSCCIS LMNSSSNMIY  300
WEGHHQQQQQ QHQMLLQQQQ HMSRNVMGEW DLEELMKDVS SLPFLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27361387108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139000.0AL713900.4 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankJN6340840.0JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619488.11e-146transcription factor MYB83
TrEMBLA0A0D3HV160.0A0A0D3HV16_9ORYZ; Uncharacterized protein
STRINGOBART12G13720.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-64myb domain protein 46