PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G13250.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 362aa    MW: 39895.8 Da    PI: 7.1781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G13250.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26e-3292148259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  OBART12G13250.2  92 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 148
                      8**************************************99.***************8 PP
2WRKY107.85.4e-34248306159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  OBART12G13250.2 248 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 306
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-2988150IPR003657WRKY domain
SuperFamilySSF1182901.57E-2590150IPR003657WRKY domain
SMARTSM007742.5E-3491149IPR003657WRKY domain
PROSITE profilePS5081123.19292150IPR003657WRKY domain
PfamPF031069.3E-2592148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37234308IPR003657WRKY domain
SuperFamilySSF1182901.44E-29240308IPR003657WRKY domain
PROSITE profilePS5081137.413243308IPR003657WRKY domain
SMARTSM007741.1E-39248307IPR003657WRKY domain
PfamPF031062.4E-26249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGGFGMSHRE ALAQVTAQAS HSPLRMFDHT EQPSFSAAPT SSEAMQHMNA AVNMTGISDM  60
VMGPTNNENV AFQPAEASQR YQVNAPVDKP ADDGYNWRKY GQKVVKGSDC PRSYYKCTHP  120
NCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRAKDGSS SAADQNEQSN DTTSGLSGIK  180
RDQEAIYGMS EQLSGLSEGD DMDDGESRPH EADDKESDSK KRNIQISSQR TSAEAKIIVQ  240
TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTYAGCN VRKHIERASS DPKAVITTYE  300
GKHNHEPPVG RGNNQNAGNA APSSSAQQNM QNLSSNQASL TMADFNNINQ RPIGVLQFKS  360
EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3992308877Probable WRKY transcription factor 4
2lex_A1e-3992308877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-105WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D3HUW30.0A0A0D3HUW3_9ORYZ; Uncharacterized protein
STRINGOBART12G13250.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-106WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]