PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G12240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 411aa MW: 43859 Da PI: 9.0194 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.2 | 1.4e-23 | 108 | 152 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e OBART12G12240.1 108 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 152 689***************************************986 PP | |||||||
2 | QLQ | 58.6 | 1.8e-20 | 37 | 73 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++ OBART12G12240.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 73 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 37 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.836 | 38 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-15 | 38 | 72 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.527 | 108 | 152 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.8E-20 | 110 | 151 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MAMATPTTNG SFLLGSGLDC GSSDVTRMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN 60 APVPAGLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ LGYSGSADSE PGRCRRTDGK 120 KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHAAKA TVPAIAQPPI GASNGKLSGS 180 HGVSNELTKT LATNRMMLDK ANLIERSQDY TNQQHNILQN NTKGDNWSEE MSSQADYAVI 240 PAGSLMNTPQ SANLNPIPQQ QRCKQSLFGK GIQHDDIQLS ISIPVDNSDL PTNYNKAQMD 300 HVVGGSSNGG NNTRASWIPG SWEASIGGPL GEFFTNTSGA SDDKGKSRHP PSLNLLADGH 360 TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS GLVNAQTVQT L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241557 | 0.0 | AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618985.1 | 0.0 | growth-regulating factor 7 isoform X2 | ||||
Swissprot | Q6AWY2 | 0.0 | GRF7_ORYSJ; Growth-regulating factor 7 | ||||
TrEMBL | A0A0D3HUJ3 | 0.0 | A0A0D3HUJ3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G12240.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-43 | growth-regulating factor 2 |