PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G11990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 874aa MW: 97151.9 Da PI: 7.5536 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 6.8e-24 | 116 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + OBART12G11990.1 116 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 205 99*****************************544..455569************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ OBART12G11990.1 206 ENGELRVGVRRA 217 9999*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-42 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-41 | 109 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.61E-22 | 114 | 216 | No hit | No description |
Pfam | PF02362 | 8.7E-22 | 116 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-24 | 116 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-34 | 242 | 324 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-11 | 668 | 766 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.837 | 681 | 765 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.38E-12 | 683 | 757 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
MMFLPCLCDL EERPDSFLLL LLLSSVLFQV EASTNQVAEQ QGAPLYNLPW KIPCKVMNVE 60 LKAEPDTDEV YAQLTLLPEK QQDGNGSGNG YVSKDKVEEE EVVPPAATER PRVHSFCKTL 120 TASDTSTHGG FSVLRRHADE CLPPLDMSQH PPTQELVAKD LHGVEWRFRH IFRGQPRRHL 180 LQSGWSVFVS AKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QANIPSSVIS SHSMHLGVLA 240 TAWHAVNTGT MFTVYYKPRT SPSEFVVPRD LYEESLKRNH SIGMRFKMTF EGEEAAEQRF 300 TGTIVGVGDS DPSGWADSKW RSLKVRWDEA ASVPRPDRVS PWQIEPANSP SPVNPLPAPR 360 TKRARPNVLA SSPDLSAVNK EVASKVMANS QQNGLPRAFH SQENMNLRSR FGDSNELNTS 420 QKLTMWSSGS NQEKNNVSVQ RELGSQSWMQ MRRPDGSSEI LSGFQPLKDT RNPLSSFPSQ 480 ISGNRSNTWN TINVHYPDQN ANHNMYPGTW SLMPPNTGFG VNQQNYLMTP DITLPQRSLN 540 AKFGGNGAFT SLRAHGIDQR SSGWLGHIEP SSHIDDASSS LIKPQPLVID HNVQKAKGSS 600 CMLFGISLDS PAKPELLISP PSVAFDGKLQ QDALEEDECS DPSKTVNPLD GAQHDSATEK 660 HQSCPDGTKN IQSKQQNGSS RSCKKVHKQG IALGRSIDLT KFTCYDELIA ELDQMFDFNG 720 ELNSSSKNWM VVYTDNEGDM MLVGDDPWNE FCNMVHKIFI YTREEVQKMN PGALNSRSFV 780 VCKNRRRHIH GRKESFRGVV VVAGALYVSG KPRSTPFVDG ACPGISCPLF VFDKFWVCFV 840 EVLSYCMICP VVVKGAEAKL PRPVRLLACA LPPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-146 | 29 | 351 | 51 | 359 | Auxin response factor 1 |
4ldw_A | 1e-146 | 29 | 351 | 51 | 359 | Auxin response factor 1 |
4ldw_B | 1e-146 | 29 | 351 | 51 | 359 | Auxin response factor 1 |
4ldx_A | 1e-146 | 29 | 351 | 51 | 359 | Auxin response factor 1 |
4ldx_B | 1e-146 | 29 | 351 | 51 | 359 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065254 | 0.0 | AK065254.1 Oryza sativa Japonica Group cDNA clone:J013002J11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620411.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Refseq | XP_015620412.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | A0A0D3HUG1 | 0.0 | A0A0D3HUG1_9ORYZ; Auxin response factor | ||||
STRING | OBART12G11990.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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