PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G11990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 874aa    MW: 97151.9 Da    PI: 7.5536
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G11990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.8e-24116217199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  OBART12G11990.1 116 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 205
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  OBART12G11990.1 206 ENGELRVGVRRA 217
                      9999*****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-42109231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-41109245IPR015300DNA-binding pseudobarrel domain
CDDcd100177.61E-22114216No hitNo description
PfamPF023628.7E-22116217IPR003340B3 DNA binding domain
SMARTSM010199.8E-24116218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899116218IPR003340B3 DNA binding domain
PfamPF065073.5E-34242324IPR010525Auxin response factor
PfamPF023091.2E-11668766IPR033389AUX/IAA domain
PROSITE profilePS5174523.837681765IPR000270PB1 domain
SuperFamilySSF542776.38E-12683757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MMFLPCLCDL EERPDSFLLL LLLSSVLFQV EASTNQVAEQ QGAPLYNLPW KIPCKVMNVE  60
LKAEPDTDEV YAQLTLLPEK QQDGNGSGNG YVSKDKVEEE EVVPPAATER PRVHSFCKTL  120
TASDTSTHGG FSVLRRHADE CLPPLDMSQH PPTQELVAKD LHGVEWRFRH IFRGQPRRHL  180
LQSGWSVFVS AKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QANIPSSVIS SHSMHLGVLA  240
TAWHAVNTGT MFTVYYKPRT SPSEFVVPRD LYEESLKRNH SIGMRFKMTF EGEEAAEQRF  300
TGTIVGVGDS DPSGWADSKW RSLKVRWDEA ASVPRPDRVS PWQIEPANSP SPVNPLPAPR  360
TKRARPNVLA SSPDLSAVNK EVASKVMANS QQNGLPRAFH SQENMNLRSR FGDSNELNTS  420
QKLTMWSSGS NQEKNNVSVQ RELGSQSWMQ MRRPDGSSEI LSGFQPLKDT RNPLSSFPSQ  480
ISGNRSNTWN TINVHYPDQN ANHNMYPGTW SLMPPNTGFG VNQQNYLMTP DITLPQRSLN  540
AKFGGNGAFT SLRAHGIDQR SSGWLGHIEP SSHIDDASSS LIKPQPLVID HNVQKAKGSS  600
CMLFGISLDS PAKPELLISP PSVAFDGKLQ QDALEEDECS DPSKTVNPLD GAQHDSATEK  660
HQSCPDGTKN IQSKQQNGSS RSCKKVHKQG IALGRSIDLT KFTCYDELIA ELDQMFDFNG  720
ELNSSSKNWM VVYTDNEGDM MLVGDDPWNE FCNMVHKIFI YTREEVQKMN PGALNSRSFV  780
VCKNRRRHIH GRKESFRGVV VVAGALYVSG KPRSTPFVDG ACPGISCPLF VFDKFWVCFV  840
EVLSYCMICP VVVKGAEAKL PRPVRLLACA LPPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1462935151359Auxin response factor 1
4ldw_A1e-1462935151359Auxin response factor 1
4ldw_B1e-1462935151359Auxin response factor 1
4ldx_A1e-1462935151359Auxin response factor 1
4ldx_B1e-1462935151359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652540.0AK065254.1 Oryza sativa Japonica Group cDNA clone:J013002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A0D3HUG10.0A0A0D3HUG1_9ORYZ; Auxin response factor
STRINGOBART12G11990.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]