PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G07040.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 949aa MW: 103448 Da PI: 4.7337

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G07040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	51	98	1	48
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e Ed+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OBART12G07040.1 51 KGNWTPEeEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 98 7998725789*****************.***********97 PP
2	Myb_DNA-binding	47.3	4.8e-15	104	146	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ OBART12G07040.1 104 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 146 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.994	46	102	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-28	49	145	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-14	50	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-24	52	106	IPR009057	Homeodomain-like
CDD	cd00167	9.38E-14	53	98	No hit	No description
Pfam	PF13921	2.4E-15	54	115	No hit	No description
PROSITE profile	PS51294	19.654	103	153	IPR017930	Myb domain
SMART	SM00717	4.4E-14	103	151	IPR001005	SANT/Myb domain
CDD	cd00167	6.67E-11	106	146	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-21	107	153	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MMTSDNGKAP EKGGEASGPS SAPQEGEISN EPQRRRPLSG RTTGPTRRST KGNWTPEEED 60 DIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEITLIHAHR 120 MYGNKWAELT KFLPGRTDNA IKNHWNSSVK KKVDSYMSSG LLTQVSCLPL NEYSAHCNSS 180 PALTQQNSED SGSYAVREVE NSSVCSQSSL AKVSCSQVHN ANVALGCDLQ VNANVDNNEA 240 HDSQSSVGHE ACYTSVGAVA TAIPEVHYHV SSSNFDPDQH LQEEFAQGLN LHMSMDEVPS 300 NSSFADNPTI CSIENHERSL EPYDVAMEMP LSMLPSDSGA EQKLHFMSEA DFNSPNCLKS 360 ELWQDISLQS LLSGPDAVET DSFSRSNHQS DVYSSQADNE FLAPPYLLQT SNSSSVMEAT 420 YGQSPQMSVP PSLICSNVMT DVPSDNRSEP KEMTVSQAEM VTQSSSSSGD AEMSANPGSS 480 NGSDIPSMME RIPECADQHV TNAEEPEASI EKEPSVTPSA TADEKQDEGA LFYEPPRFPS 540 MDVPFVSCDL VTSGDLQEYS PLGIRQLMRS TMNVCTPMRL WGSPTHDESP DILLKSAAKS 600 FICTPSILKK RHRDLVSPIP DKRIEKKSGT EKDCGVSDTS SIGIQTCFIN ATKDDAVINK 660 SVLRIERSAS SKPLEKKLEF SDENKENLDN TIEQAKDGQS AGNYKHIDEQ ARGERRTATN 720 ITTTYDDLPG NLQPAGILIE HNGDDLVSPD YGKNTMKQKQ NTNMESLSVC KEGVSAKKPA 780 ELIVEKSSAY INVDYEYVNI LADTPGIKRG LESPSAWKSP WFVDMQFQGS YFVSPANGSY 840 DALGLVKQIN VQTAAALAEA REVLASGGQS ENINSDKENL ENPDAKKEPG ATTKLQAKIK 900 TEGKILDFNE CATPIRSSDK KAGSSLGRSL SSPIPSSHLL KSPLNGLAL

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MMTSDNGKAP EKGGEASGPS SAPQEGEISN EPQRRRPLSG RTTGPTRRST KGNWTPEEED  60
DIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEITLIHAHR  120
MYGNKWAELT KFLPGRTDNA IKNHWNSSVK KKVDSYMSSG LLTQVSCLPL NEYSAHCNSS  180
PALTQQNSED SGSYAVREVE NSSVCSQSSL AKVSCSQVHN ANVALGCDLQ VNANVDNNEA  240
HDSQSSVGHE ACYTSVGAVA TAIPEVHYHV SSSNFDPDQH LQEEFAQGLN LHMSMDEVPS  300
NSSFADNPTI CSIENHERSL EPYDVAMEMP LSMLPSDSGA EQKLHFMSEA DFNSPNCLKS  360
ELWQDISLQS LLSGPDAVET DSFSRSNHQS DVYSSQADNE FLAPPYLLQT SNSSSVMEAT  420
YGQSPQMSVP PSLICSNVMT DVPSDNRSEP KEMTVSQAEM VTQSSSSSGD AEMSANPGSS  480
NGSDIPSMME RIPECADQHV TNAEEPEASI EKEPSVTPSA TADEKQDEGA LFYEPPRFPS  540
MDVPFVSCDL VTSGDLQEYS PLGIRQLMRS TMNVCTPMRL WGSPTHDESP DILLKSAAKS  600
FICTPSILKK RHRDLVSPIP DKRIEKKSGT EKDCGVSDTS SIGIQTCFIN ATKDDAVINK  660
SVLRIERSAS SKPLEKKLEF SDENKENLDN TIEQAKDGQS AGNYKHIDEQ ARGERRTATN  720
ITTTYDDLPG NLQPAGILIE HNGDDLVSPD YGKNTMKQKQ NTNMESLSVC KEGVSAKKPA  780
ELIVEKSSAY INVDYEYVNI LADTPGIKRG LESPSAWKSP WFVDMQFQGS YFVSPANGSY  840
DALGLVKQIN VQTAAALAEA REVLASGGQS ENINSDKENL ENPDAKKEPG ATTKLQAKIK  900
TEGKILDFNE CATPIRSSDK KAGSSLGRSL SSPIPSSHLL KSPLNGLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-42	51	153	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-42	51	153	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ430051	0.0	AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878027.1	0.0	LOW QUALITY PROTEIN: transcription factor MYB3R-4-like
TrEMBL	A0A0D3HSU8	0.0	A0A0D3HSU8_9ORYZ; Uncharacterized protein
STRING	OBART12G07040.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-56	Homeodomain-like protein