PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G03570.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 448aa    MW: 48757.7 Da    PI: 4.4092
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G03570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.32e-26132197171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kfl+ll+ ++ giv+ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  OBART12G03570.1 132 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 197
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-28130198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-35132197IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-16132195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-23134197IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.26E-49208314No hitNo description
SuperFamilySSF1440743.92E-33209314No hitNo description
PfamPF164211.4E-33213312IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFGSGGAAA AAAGDMTEAV FIRTPLKRKH  60
DREENEAAES NDWMMSPGYT NPAGSPVPTP LSGKGSKAFA KSKAAKGQKS CPQTPLCASS  120
PGNPVTPVGG CRYDSSLGLL TKKFLNLLKG APGGIVDLNN AAETLEVQKR RIYDITNVLE  180
GIGLIEKKLK NNIRWKGIDD SRPGEVSDDM SILQADIEAL SLQEHSVDQQ ISEMRDKLRG  240
LTEDENNQKW LYVTEDDIKS LPCFQNQTLI AIKAPHGTTL EVPDPDEVND YPQRRYRIVL  300
RSTMGPIDVY LVSQFEEMSG METPPRTVQP VSMDSLENPR TPLAAEPNKA AESQPNIQDG  360
LLMPSDAPSS SQDIGGMMKI VPSELDTDAD YWLLSDAGVS ITDMWKTAPE VEWEGIEKFN  420
AEDFLEVSTP RQQDKPSSDI MDGDSCIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22121198274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0592330.0AK059233.1 Oryza sativa Japonica Group cDNA clone:001-024-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620749.10.0transcription factor E2FA
SwissprotQ9FNY01e-123E2FA_ARATH; Transcription factor E2FA
TrEMBLA0A0D3HRN40.0A0A0D3HRN4_9ORYZ; Uncharacterized protein
TrEMBLI1R4900.0I1R490_ORYGL; Uncharacterized protein
STRINGORGLA12G0034600.10.0(Oryza glaberrima)
STRINGOBART12G03570.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-108E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]