PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G03490.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 277aa MW: 31064.6 Da PI: 7.7821

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G03490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96	2.5e-30	36	129	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ OBART12G03490.1 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGlG 129 99**************************9555568889**********************************************876543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-41	31	145	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.19E-30	33	127	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.19E-28	35	127	No hit	No description
PROSITE profile	PS50863	13.634	36	142	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-22	36	141	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-27	36	140	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV 120 HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS 180 YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG 240 PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-50	31	141	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-50	31	141	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928758	0.0	AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618154.1	0.0	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-134	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A0D3HRM6	0.0	A0A0D3HRM6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0J6Z5	0.0	A0A0E0J6Z5_ORYNI; Uncharacterized protein
TrEMBL	I1R481	0.0	I1R481_ORYGL; Uncharacterized protein
STRING	ONIVA12G03130.1	0.0	(Oryza nivara)
STRING	ORGLA12G0033700.1	0.0	(Oryza glaberrima)
STRING	OBART12G03490.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	1e-52	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]