PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G03440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 24511.3 Da PI: 6.1127 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.4 | 6.7e-41 | 19 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y ++P++L + ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+ OBART12G03440.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112 69**********************995666778**************8445544444666********************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++ OBART12G03440.1 113 FVFSSssaaATRVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154 ***9866666667***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-43 | 16 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.57 | 18 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-23 | 20 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY 60 HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSSA 120 AATRVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAA DDDHNAAGVA VQLPPMAPPP 180 SSSASGGSSE DAAIDWSSLI TAATDSATAA VDFSFNDDID FSPAAVGPWA PQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL954632 | 0.0 | AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. | |||
GenBank | KP033190 | 0.0 | KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619441.1 | 1e-105 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-56 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D3HRM1 | 1e-167 | A0A0D3HRM1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G03440.1 | 1e-168 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-51 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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