PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G02080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 402aa    MW: 43922.8 Da    PI: 6.8952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G02080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.11.9e-1522233613128
              NAM  13 elvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                      +l+++yL + ++gk+++ +e  i ++d+y +eP+dL  k     +   e+    fF++ ++++ +++rk+r++ +g+W  + + k v++k g +
  OBART12G02080.1 222 DLITFYLPRLIAGKPTKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKNKAGVK 312
                      79*************6654544**************843454222..2445779999999999****************8866.889999**** PP

              NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                      vg  + + f      +g+ tdW+m+e + 
  OBART12G02080.1 313 VGETQNFRFK-----DGSYTDWLMEEHHC 336
                      *********7.....7889*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18201.4E-123108IPR029058Alpha/Beta hydrolase fold
PfamPF078596.6E-8680IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF534747.99E-71184IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5100515.383210356IPR003441NAC domain
PfamPF023655.0E-6222335IPR003441NAC domain
SuperFamilySSF1019413.14E-16222356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVDKLLALGV PLGMNKDSPY TSPSLAAEAV ARLHMPPMLL MVAEKDLLHD PQVEYGEAMA  60
RVGKTVETVV SRGAVAHVFY LNFFAERQEA ANPTTTTRTL VESITNWIRV YSDGSVDRLG  120
PPEAAAFMVL VPPYDDPRDG VTVHDVATDH GVDVRLYLTG AALFSFISTA AASACPTPRV  180
ETVVSHGRGI GHVFYLNWFA VESHPVAAAR ARELVDAVKS FDLITFYLPR LIAGKPTKDT  240
EKFICRADVY GSEPSDLAGK FAPVPRCEKG GRLFFTSCKR HKGSSTRKER TAGDGTWVRQ  300
NSKGVKNKAG VKVGETQNFR FKDGSYTDWL MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP  360
PDSAARQESA AFVQQQPAPQ VSEPPCDKKN RDDVAEEAPA AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HR570.0A0A0D3HR57_9ORYZ; Uncharacterized protein
STRINGOBART12G02080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799