PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G20210.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 321aa    MW: 35042.8 Da    PI: 9.8215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G20210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.63e-102623164595
                      EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3  45 sWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      +W+  +++      ++r++lt+GWk Fv+an+L  g ++ F++ ++ ++ +lvv 
  OBART11G20210.1 262 EWTTVCSMkigISPDDRVILTSGWKTFVQANKLTMGATCAFEFFEQnEQLNLVVY 316
                      444444443333334569************************7755488888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.20E-7232317No hitNo description
SuperFamilySSF1019361.04E-8246311IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-8262316IPR003340B3 DNA binding domain
PROSITE profilePS508639.46262319IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-8263315IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSICLISQPI PKFPKSAVPS AAAALSRPAR PLRRRCPPPR PSPPLPPRRC PTRPLRCRRV  60
GAMKPGRRTS SAADPQIHQS PRLIAEAGKQ TVATSSSRYR AGKQTTATSS TRHRAGPSST  120
SSPCHQAGPS SFFPSPHQAG AASSARRRGN DGSDGEDDTS DGGSDDVSDC SDGEAKERER  180
AISMLASVRR ETIVCGPKGL RYAGGFHTHC WYGNDVTLTK DFQEKLACIV ALKEKRSIIP  240
LRRYLHKYLE EPIDDFGVMN GEWTTVCSMK IGISPDDRVI LTSGWKTFVQ ANKLTMGATC  300
AFEFFEQNEQ LNLVVYSLDL L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HP390.0A0A0D3HP39_9ORYZ; Uncharacterized protein
STRINGOBART11G20210.10.0(Oryza barthii)