PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G19600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 105aa MW: 11581.2 Da PI: 10.4051 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.6e-09 | 48 | 98 | 4 | 49 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFq 49 ++t+ q+e+Le++++++++p ++r++L +l +++ +q +kvWF OBART11G19600.1 48 YVQYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFP 98 6789******************************99999987766*****5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-9 | 27 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.23E-7 | 34 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.7E-7 | 48 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.65E-5 | 51 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MSGGEGGNFG GGGGRRGGWR QRWRCPMRSG SGSDGGGYDK AGMDSGKYVQ YTPGQVEALE 60 RVYAECPKPR FSRRQQLLCE LSILANIEPK QKIKVWFPKQ KPTNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241832 | 1e-171 | AK241832.1 Oryza sativa Japonica Group cDNA, clone: J065213C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633127.1 | 9e-51 | homeobox-leucine zipper protein ROC4-like | ||||
Swissprot | A2XBL9 | 6e-30 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
Swissprot | Q6TAQ6 | 5e-30 | HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A0D3HNX2 | 2e-70 | A0A0D3HNX2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G19600.1 | 4e-71 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20296 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 1e-23 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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