PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G17080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 319aa    MW: 34803.8 Da    PI: 6.6192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G17080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
  OBART11G17080.1 15 KGPWTPEEDIILVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 62
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6421066IPR017930Myb domain
SuperFamilySSF466892.27E-221298IPR009057Homeodomain-like
SMARTSM007177.4E-141464IPR001005SANT/Myb domain
PfamPF002492.7E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231669IPR009057Homeodomain-like
CDDcd001672.04E-121762No hitNo description
PROSITE profilePS512947.667106IPR017930Myb domain
SMARTSM007170.1467104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1170106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRPPCCDNG VGVKKGPWTP EEDIILVSYI QQHGPGNWRS VPENTGLMRC SKSCRLRWTN  60
YLRPGIKRGN FTPHEEGIII HLQALLGNKT DNDIKNYWNT HLKKKVKRLQ QQQQSHPDHH  120
HHHSFQTTPS SSNAAAVATT SPNYYNPNNS NSNSSNYLHN NNHNLESMQS MATAPSNEAT  180
TIPKLFQFQT WMKPSPATTS SAATAAAGSC YKQAMAMQEL QEEQEGSAAA AAMASSIDGV  240
SKDQDYHMCA VISGDDKSSS SEMMTAAAMA GHGEAATTTF SLLENWLLDD MPGQAAMSAA  300
MDGFLEISAG YCCADPIMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-17151064105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-17151064105C-Myb DNA-Binding Domain
1msf_C2e-17151064105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369560.0AC136956.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0038B22, complete sequence.
GenBankAK1108440.0AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618031.10.0transcription factor MYB30
SwissprotB3VTV72e-75MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0D3HN190.0A0A0D3HN19_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J3C30.0A0A0E0J3C3_ORYNI; Uncharacterized protein
STRINGONIVA11G17090.10.0(Oryza nivara)
STRINGOBART11G17080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-67myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]