PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G16830.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 408aa MW: 43855.9 Da PI: 8.8111 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.9 | 7.2e-23 | 158 | 201 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OBART11G16830.2 158 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 201 59***************************************996 PP | |||||||
2 | QLQ | 58.2 | 2.6e-20 | 105 | 141 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++ OBART11G16830.2 105 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 141 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-12 | 105 | 141 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.888 | 106 | 141 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-14 | 106 | 140 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.136 | 157 | 201 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-19 | 159 | 200 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MLSSCGGHGH GNPRSLQEEH HGRCGEQQGG GGGGGQEQEQ DGFLVREARA SPPSPSSSSF 60 LGSTSSCSGG GGGGQMLSFS SPNGTAGLGL SSGGSMQGVL ARVRGPFTPT QWMELEHQAL 120 IYKHIAANVS VPSSLLLPIR RSLHPWGWGS FPPGCADVEP RRCRRTDGKK WRCSRDAVGD 180 QKYCERHINR GRHRSRKHVE GRKATLTIAE PSMVIAAGVS SRGHTVARQK QVKVSAATVS 240 DPFSRQSNRK FLEKQNVVDQ LSPMDSFDFS STQSSPNYDN VALSPLKLHH DHDESYIGHG 300 AGSSSEKGSM MHESRLTVSK ETLDDGPLGE VFKRKNCQSA STEILTEKWT ENPNLHCPSG 360 ILQMATKFNS ISSGNTVNSG GTAVENLITD NGYLTARMMN PHIVPTLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103055 | 0.0 | AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615703.1 | 0.0 | growth-regulating factor 8 | ||||
Swissprot | Q6AWY1 | 0.0 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0D3HMZ2 | 0.0 | A0A0D3HMZ2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1R0X1 | 0.0 | I1R0X1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0141300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART11G16830.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-37 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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