PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G14720.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 282aa    MW: 31061.3 Da    PI: 7.4765
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G14720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.1e-32191482128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       +G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi  ++Pwd+   + ++++  +fF++++++++++ ++n a+ +g+W+  g++ ++++k
  OBART11G14720.1  19 SVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV-PAGEKKNGKHFFTRKENSHPRDYESNHAAGDGFWRLVGTEVPIYNK 110
                      68***************************.99**************5.455667899************************************* PP

              NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++lvg+k+tLvf+  +++++e+t Wvm+e+rl
  OBART11G14720.1 111 psggaDEKLVGMKRTLVFHFRKSSSTERTGWVMQEFRL 148
                      999988889**********9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3415158IPR003441NAC domain
PROSITE profilePS5100532.93818214IPR003441NAC domain
PfamPF023652.8E-1720148IPR003441NAC domain
SuperFamilySSF1019411.57E-34202214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGPGVCINL LNGTTMHLSV GCVFRPTEGE LVVNYLYRRA MQEPLPCDFI TDVDIQCHNP  60
WDIVPAGEKK NGKHFFTRKE NSHPRDYESN HAAGDGFWRL VGTEVPIYNK PSGGADEKLV  120
GMKRTLVFHF RKSSSTERTG WVMQEFRLAG ASLVPCLVMR PATGDVSMPP CGCPETTTTK  180
KNNGSPSAAH THAPLVETMV EPDNSWMICR IYKKRQRAPQ VIIPPSIGNA WEAVLTVPAI  240
GNAGDRQVNF IDFPGHRCFE EGSDESANVI TKDKGSDGYG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-181614813140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.11e-125NAC transcription factor NAM-1
TrEMBLA0A0D3HM760.0A0A0D3HM76_9ORYZ; Uncharacterized protein
STRINGOBART11G14720.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.19e-25NAC domain containing protein 25