PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G14710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 285aa    MW: 31321.4 Da    PI: 6.4325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G14710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.84e-31271499128
              NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kg 97 
                      Pt+ +lvv+yL++++ ++++++ ++i++vdi++++Pwd+   ++++++  yfF++++++   ++++nra+ +g+W+  g++ ++++k     ++
  OBART11G14710.1  27 PTNADLVVHYLHRRAIQEPVPC-DFITNVDILQHNPWDIV-PAEEKTNGKYFFIHEENERLGNHHSNRAAGDGFWRPAGSEVPIYHKcsggaDE 118
                      9*********************.99**************5.455677899**********99************************99988777 PP

              NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                      + vg+k+tLvf+ g+++++++t+Wvm+e+rl
  OBART11G14710.1 119 APVGMKRTLVFHYGNSSSAKRTEWVMQEFRL 149
                      78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.45519215IPR003441NAC domain
SuperFamilySSF1019415.23E-3026153IPR003441NAC domain
PfamPF023653.1E-1527149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQEVLERRMA SPGVCINLVN GTSTRLPTNA DLVVHYLHRR AIQEPVPCDF ITNVDILQHN  60
PWDIVPAEEK TNGKYFFIHE ENERLGNHHS NRAAGDGFWR PAGSEVPIYH KCSGGADEAP  120
VGMKRTLVFH YGNSSSAKRT EWVMQEFRLA GAILIPCPVT RPATGDGSML PCHRTGTTIA  180
TENNGSPSAG QTHGPLEKTM VEPDSSLRIC RIYKKRQRTP QFIIPPSIGD ARELILALPT  240
IGNTREVALA LPTIDFLGQP SFEEGSDVSA DVITDDKDGY GHGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-172714923140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420100.0AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence.
GenBankEU8470010.0EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.10.0NAC transcription factor NAM-1
TrEMBLA0A0D3HM740.0A0A0D3HM74_9ORYZ; Uncharacterized protein
STRINGORUFI11G15720.10.0(Oryza rufipogon)
STRINGOS11T0512100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-23NAC domain containing protein 94